Data Hierarchy for BrainFX : FMRI

The Data Hierarchy for BrainFX is the FMRI hierarchy. It is defined in plugin org.brainfx.base. See this page on how to read the XML description below.

   <extension
         id="fMRI"
         name="fMRI Hierarchy"
         point="org.genericfx.data.hierarchy">
      <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy Root Element"
            parent="HIERARCHY_ROOT"
            id="ROOT"
            description="Root of the hierarchy"/>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy File Element"
            parent="ROOT"
            id="FILE"/>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy 4D Image"
            parent="FILE"
            id="IMAGE_4D"
            description="This is expected to be a two byte signed integer (short int in C)."/>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hiearachy Medical Scan 4D Image"
            parent="IMAGE_4D"
            id="SCAN_4D"/>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy fMRI Scan 4D Image"
            parent="SCAN_4D"
            id="FMRI_4D"/>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy 3D Image"
            parent="FILE"
            id="IMAGE_3D"/>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hieararchy Medical Scan 3D Image"
            parent="IMAGE_3D"
            id="SCAN_3D"/>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy Mask 3D Image"
            parent="FILE"
            id="MASK_3D"
            description='The mask is a two byte signed integer format (short int in C) 
                and have out-of-mask value of "zero" or smaller. Other values are all in-mask.'> 
         <accepts
               datatype_id="SCAN_3D"
               status="WARN">
            <message>All greater than zero will be treated as 1 (in mask), 0 otherwise (out-of-mask)</message>
         </accepts>
      </datatype>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy Design Matrix"
            parent="FILE"
            id="DESIGN_MATRIX"
            description="Design matrix"/>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy 3D Statistics Map"
            parent="SCAN_3D"
            id="STATISTICS_MAP_3D"
            description="Standard Statistics Map"/>
      <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy 3D Template Map"
            parent="SCAN_3D"
            id="TEMPLATE_3D"
            description="Template Map. Usually these are maps with anatomical information"/>
     <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy Image 2D"
            parent="FILE"
            id="IMAGE_2D"
            description="Two Dimensional Image Data"/>
    <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy Nothing"
            parent="ROOT"
            id="NOTHING"
            description="Nothing. This is a place holder"/>
    <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy String"
            parent="ROOT"
            id="STRING"
            description="String Data"/>
   <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy Directory"
            parent="ROOT"
            id="DIRECTORY"
            description="Directory"/>
   <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy Real Number"
            parent="ROOT"
            id="NUMBER"
            description="Number. A real number"/>
   <datatype
            hierarchy="fMRI"
            name="fMRI Hierarchy Integer"
            parent="NUMBER"
            id="INTEGER"
            description="Integer Number"/>   
  </extension>