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http://www.brainfx.org/wiki/ 2008-10-25T10:43:41+01:00 http://www.brainfx.org/wiki/ http://www.brainfx.org/wiki/lib/images/favicon.ico text/html 2008-10-20T15:49:00+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/structural_graphfx?do=diff&1224514140 Danielle Bassett’s Structural Graph (strucgraph) Developer Section packaging - packaging instruction for GUI ... text/html 2008-10-20T15:47:27+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/start?do=diff&1224514047 If you are looking for the homepage of BrainFX, use the link below. http://www.brainfx.org BrainFX website consists of the front page (above), this wiki and a shared blog with GenericFX. This is not a publicly editable wiki. Derivatives Brain... text/html 2007-12-14T17:02:00+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/packaging?do=diff&1197651720 BrainwaverFX Packaging Instruction Before export Update uk.ac.cam.psychiatry.brainwaver about.ini about.mappings about.properties Update uk.ac.cam.psychiatry.brainwaver.graphics splash.xcf splash.bmp Update uk.ac.cam.psychiatry.brainwave... text/html 2007-12-14T14:43:45+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx?do=diff&1197643425 This is a set of plugins working as front end to Brainwaver Package prefix uk.ac.cam.psychiatry.brainwaverfx Requires Rfx Resources Installation BrainwaverFX Packaging Instruction Troubleshooting ... text/html 2007-12-14T14:13:00+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/installation?do=diff&1197641580 Installation Need to install R packages brainwaver, scatterplot3d and waveslim. A copy of which is available in plugin uk.ac.cam.psychaitry.brainwaver/software/store. These packages are distributed under the GNU GPL license. It is recommended that... text/html 2007-11-01T15:52:05+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/input_data?do=diff&1193932325 See also: Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 1 did not have XXX elements Errors Error in if(f >= 0) { : missing values where TRUE/FALSE needed Source: 2dgraph.R, global_efficiency_graph.R, com... text/html 2007-11-01T15:50:41+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/correlate_wt.r?do=diff&1193932241 The number of columns in the header line of your input .fmri file does not match the number of columns in the first line of the data. Tip: open the .fmri file in a spreadsheet to see whether you are short of or have too many columns in the header f... text/html 2007-11-01T15:46:20+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/resilience.r?do=diff&1193931980 See also: Error in if(f >= 0) { : missing values where TRUE/FALSE needed ... text/html 2007-11-01T15:46:04+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/compute_adjacencies.r?do=diff&1193931964 See also: Error in if(f >= 0) { : missing values where TRUE/FALSE needed ... text/html 2007-11-01T15:45:48+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/global_efficiency_graph.r?do=diff&1193931948 See also: Error in if(f >= 0) { : missing values where TRUE/FALSE needed ... text/html 2007-11-01T15:45:19+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting?do=diff&1193931919 Troubleshooting Trouble attributed to input data brainwaver-test.sh correlate_WT.R 2dgraph.R global_efficiency_graph.r compute_adjacencies.r resilience.r ... text/html 2007-11-01T15:44:14+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/2dgraph.r?do=diff&1193931854 See also: Error in if(f >= 0) { : missing values where TRUE/FALSE needed ... text/html 2007-11-01T15:17:09+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/brainwaver_test.sh?do=diff&1193930229 It looks like a R_LIBS or environment problem. Set R_LIBS explicitly. Then delete ~/Renviron and ~/Rhistory if need be. ... text/html 2007-05-24T13:41:52+01:00 Cinly Ooi (co224@131.111.190.9) http://www.brainfx.org/wiki/derivate/bmu_naming_convension?do=diff&1180010512 The BMU‘s package naming convension is as follow For software developed by BMU uk.ac.cam.psychiatry.<package_name> For software developed elsewhere but customized by BMU uk.ac.cam.psychiatry.bmu.<package_name> ... text/html 2007-05-24T13:32:57+01:00 Cinly Ooi (co224@131.111.190.9) http://www.brainfx.org/wiki/derivatives/tbssfx?do=diff&1180009977 This encapsulate how BMU uses the TBSS pipeline from FSL. Available pipelines: TBSS Pipeline : encapsulating the processing described in http://www.fmrib.ox.ac.uk/fsl/tbss/index.html Information Requires FSLfx plugin. package prefix is uk.ac.c... text/html 2006-12-14T13:48:51+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/fslfx/customisation?do=diff&1166104131 FSL must be customized for BrainFX use. The customization of FSL in FSLfx is gear towards BMU Data Standard for fMRI analysis. It is important to note that we are not recreating FSL User Interface inside BrainFX. The modules imported might not be f... text/html 2006-11-29T16:08:43+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/derivatives/fslfx?do=diff&1164816523 Website is work in progress FSLfx is a plugin designed to allow FSL to be used in BrainFX. It is developed and maintained separately and is not affiliated with FMRIB, the creator of FSL. The objective of developing FSLfx is to support work in the... text/html 2006-05-25T12:02:00+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/users?do=diff&1148554920 See also http://www.genericfx.org/wiki/users Sections ... text/html 2006-05-09T17:55:53+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/misc/iatr?do=diff&1147193753 http://www.cma.mgh.harvard.edu/iatr/ Note: Top level heading is fixed by IATR, thus not editable. ENTRY Name BrainFX : A Pipeline-based Graphical User Interface for functional Magnetic Resonance (fMRI) imaging Byline Customization of Gen... text/html 2006-05-09T17:28:05+01:00 Cinly Ooi (co224@131.111.88.212) http://www.brainfx.org/wiki/misc?do=diff&1147192085 Miscellaneous IATR entry for Brainfx ...