BrainFX Wiki
http://www.brainfx.org/wiki/
2008-10-25T10:43:41+01:00BrainFX Wiki
http://www.brainfx.org/wiki/
http://www.brainfx.org/wiki/lib/images/favicon.icotext/html2008-10-20T15:49:00+01:00Cinly Ooi (co224@131.111.88.212)Structural Graph - created
http://www.brainfx.org/wiki/derivatives/structural_graphfx?do=diff&1224514140
Danielle Bassett’s Structural Graph (strucgraph) Developer Section packaging - packaging instruction for GUI ...text/html2008-10-20T15:47:27+01:00Cinly Ooi (co224@131.111.88.212)Welcome to BrainFX Wiki
http://www.brainfx.org/wiki/start?do=diff&1224514047
If you are looking for the homepage of BrainFX, use the link below. http://www.brainfx.org BrainFX website consists of the front page (above), this wiki and a shared blog with GenericFX. This is not a publicly editable wiki. Derivatives Brain...text/html2007-12-14T17:02:00+01:00Cinly Ooi (co224@131.111.88.212)BrainwaverFX Packaging Instruction
http://www.brainfx.org/wiki/derivatives/brainwaverfx/packaging?do=diff&1197651720
BrainwaverFX Packaging Instruction Before export Update uk.ac.cam.psychiatry.brainwaver about.ini about.mappings about.properties Update uk.ac.cam.psychiatry.brainwaver.graphics splash.xcf splash.bmp Update uk.ac.cam.psychiatry.brainwave...text/html2007-12-14T14:43:45+01:00Cinly Ooi (co224@131.111.88.212)BrainwaverFX
http://www.brainfx.org/wiki/derivatives/brainwaverfx?do=diff&1197643425
This is a set of plugins working as front end to Brainwaver Package prefix uk.ac.cam.psychiatry.brainwaverfx Requires Rfx Resources Installation BrainwaverFX Packaging Instruction Troubleshooting ...text/html2007-12-14T14:13:00+01:00Cinly Ooi (co224@131.111.88.212)Installation - created
http://www.brainfx.org/wiki/derivatives/brainwaverfx/installation?do=diff&1197641580
Installation Need to install R packages brainwaver, scatterplot3d and waveslim. A copy of which is available in plugin uk.ac.cam.psychaitry.brainwaver/software/store. These packages are distributed under the GNU GPL license. It is recommended that...text/html2007-11-01T15:52:05+01:00Cinly Ooi (co224@131.111.88.212)Trouble attributed to input data
http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/input_data?do=diff&1193932325
See also: Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 1 did not have XXX elements Errors Error in if(f >= 0) { : missing values where TRUE/FALSE needed Source: 2dgraph.R, global_efficiency_graph.R, com...text/html2007-11-01T15:50:41+01:00Cinly Ooi (co224@131.111.88.212)correlate_WT.R
http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/correlate_wt.r?do=diff&1193932241
The number of columns in the header line of your input .fmri file does not match the number of columns in the first line of the data. Tip: open the .fmri file in a spreadsheet to see whether you are short of or have too many columns in the header f...text/html2007-11-01T15:46:20+01:00Cinly Ooi (co224@131.111.88.212)resilience.r - created
http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/resilience.r?do=diff&1193931980
See also: Error in if(f >= 0) { : missing values where TRUE/FALSE needed ...text/html2007-11-01T15:46:04+01:00Cinly Ooi (co224@131.111.88.212)compute_adjacencies.r - created
http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/compute_adjacencies.r?do=diff&1193931964
See also: Error in if(f >= 0) { : missing values where TRUE/FALSE needed ...text/html2007-11-01T15:45:48+01:00Cinly Ooi (co224@131.111.88.212)global_efficiency_graph.r - created
http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/global_efficiency_graph.r?do=diff&1193931948
See also: Error in if(f >= 0) { : missing values where TRUE/FALSE needed ...text/html2007-11-01T15:45:19+01:00Cinly Ooi (co224@131.111.88.212)Troubleshooting
http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting?do=diff&1193931919
Troubleshooting Trouble attributed to input data brainwaver-test.sh correlate_WT.R 2dgraph.R global_efficiency_graph.r compute_adjacencies.r resilience.r ...text/html2007-11-01T15:44:14+01:00Cinly Ooi (co224@131.111.88.212)2dgraph.R
http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/2dgraph.r?do=diff&1193931854
See also: Error in if(f >= 0) { : missing values where TRUE/FALSE needed ...text/html2007-11-01T15:17:09+01:00Cinly Ooi (co224@131.111.88.212)brainwaver-test.sh - created
http://www.brainfx.org/wiki/derivatives/brainwaverfx/troubleshooting/brainwaver_test.sh?do=diff&1193930229
It looks like a R_LIBS or environment problem. Set R_LIBS explicitly. Then delete ~/Renviron and ~/Rhistory if need be. ...text/html2007-05-24T13:41:52+01:00Cinly Ooi (co224@131.111.190.9)BMU naming convension - created
http://www.brainfx.org/wiki/derivate/bmu_naming_convension?do=diff&1180010512
The BMU‘s package naming convension is as follow For software developed by BMU uk.ac.cam.psychiatry.<package_name> For software developed elsewhere but customized by BMU uk.ac.cam.psychiatry.bmu.<package_name> ...text/html2007-05-24T13:32:57+01:00Cinly Ooi (co224@131.111.190.9)TBSSfx : Plugin for FSL's TBSS
http://www.brainfx.org/wiki/derivatives/tbssfx?do=diff&1180009977
This encapsulate how BMU uses the TBSS pipeline from FSL. Available pipelines: TBSS Pipeline : encapsulating the processing described in http://www.fmrib.ox.ac.uk/fsl/tbss/index.html Information Requires FSLfx plugin. package prefix is uk.ac.c...text/html2006-12-14T13:48:51+01:00Cinly Ooi (co224@131.111.88.212)BrainFX FSL Customization
http://www.brainfx.org/wiki/derivatives/fslfx/customisation?do=diff&1166104131
FSL must be customized for BrainFX use. The customization of FSL in FSLfx is gear towards BMU Data Standard for fMRI analysis. It is important to note that we are not recreating FSL User Interface inside BrainFX. The modules imported might not be f...text/html2006-11-29T16:08:43+01:00Cinly Ooi (co224@131.111.88.212)FSLfx
http://www.brainfx.org/wiki/derivatives/fslfx?do=diff&1164816523
Website is work in progress FSLfx is a plugin designed to allow FSL to be used in BrainFX. It is developed and maintained separately and is not affiliated with FMRIB, the creator of FSL. The objective of developing FSLfx is to support work in the...text/html2006-05-25T12:02:00+01:00Cinly Ooi (co224@131.111.88.212)Users Section - created
http://www.brainfx.org/wiki/users?do=diff&1148554920
See also http://www.genericfx.org/wiki/users Sections ...text/html2006-05-09T17:55:53+01:00Cinly Ooi (co224@131.111.88.212)IATR entry for Brainfx
http://www.brainfx.org/wiki/misc/iatr?do=diff&1147193753
http://www.cma.mgh.harvard.edu/iatr/ Note: Top level heading is fixed by IATR, thus not editable. ENTRY Name BrainFX : A Pipeline-based Graphical User Interface for functional Magnetic Resonance (fMRI) imaging Byline Customization of Gen...text/html2006-05-09T17:28:05+01:00Cinly Ooi (co224@131.111.88.212)Miscellaneous - created
http://www.brainfx.org/wiki/misc?do=diff&1147192085
Miscellaneous IATR entry for Brainfx ...